PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009617989.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 353aa    MW: 38815.1 Da    PI: 8.141
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009617989.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.33.8e-29163222159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +C vkkkv+rs ed+++++ tYegeHnh+
  XP_009617989.1 163 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApTCLVKKKVQRSVEDQSILVATYEGEHNHS 222
                     58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-28153224IPR003657WRKY domain
PROSITE profilePS5081126.096158224IPR003657WRKY domain
SuperFamilySSF1182901.11E-24160224IPR003657WRKY domain
SMARTSM007741.7E-32163223IPR003657WRKY domain
PfamPF031064.2E-23164221IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0009611Biological Processresponse to wounding
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEFTSLVDTS LDLNFRPLRV PDGIPKQEVE SNFIGLGIDH TPVKDEASDL LEELNRVSAE  60
NKKLTEMLTV MCQNYNALRN QVTEYMNKHS TTTATTTSAD DHSAGSKKRS KAENNEILKS  120
VQGESSSSDE DNSCTKKPRE EHIKTKTTRV YVRTEASDTS LIVKDGYQWR KYGQKVTRDN  180
PSPRAYFKCS FAPTCLVKKK VQRSVEDQSI LVATYEGEHN HSHPSKTDAA NAVTTSPCNR  240
LNGKSTLGVT ASVPCSNTLN SSGPNIILDL TEPKNTLQID EKKVTSSTST STAGGHNKRK  300
SSLGGGDNHQ NRPEFQHFLI EQMASSLTKD PSFQAALAAA ISGKFLPNNQ TDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lex_A2e-191622251678Probable WRKY transcription factor 4
1wj2_A2e-191622251678Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009617989.10.0PREDICTED: probable WRKY transcription factor 40
SwissprotQ9SAH79e-99WRK40_ARATH; Probable WRKY transcription factor 40
TrEMBLD3GDP71e-163D3GDP7_SOLLC; JA-induced WRKY protein
STRINGSolyc03g116890.2.11e-159(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28552450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.14e-94WRKY DNA-binding protein 40